Computational Biology Consulting

Translating biology
into code

We engineer bespoke bioinformatics pipelines, secure portals, and airgapped solutions — built from the ground up for your science.

Start a Project → Explore Services
150+
Pipelines Deployed
40+
Research Partners
Secure
HIPAA-Eligible Architectures
Private
Air-Gapped Deployments
NextflowSnakemakeWDL / CromwellTerraAWS HealthOmicsDocker / SingularityR / BioconductorPython / ScanpyGATKSingle-Cell RNA-seqSpatial TranscriptomicsVariant CallingProteomicsMetagenomicsLong-Read SequencingStructural Biology NextflowSnakemakeWDL / CromwellTerraAWS HealthOmicsDocker / SingularityR / BioconductorPython / ScanpyGATKSingle-Cell RNA-seqSpatial TranscriptomicsVariant CallingProteomicsMetagenomicsLong-Read SequencingStructural Biology
What We Do

End-to-end computational
biology services

From raw sequencing reads to publication-ready figures — we handle the computational complexity so you can focus on the science.

Bioinformatics Pipelines

Reproducible, scalable analysis workflows engineered for your specific assays — RNA-seq, WGS, scRNA-seq, ATAC-seq, proteomics, and beyond.

Nextflow Snakemake WDL CI/CD

Data Portals & Visualization

Interactive web platforms for exploring multi-omics datasets, sharing results with collaborators, and enabling self-serve analytics across your organization.

Shiny Dash React REST API

Airgapped & Secure Solutions

On-premise and air-gapped deployments for security-sensitive and regulated environments, including private research programs and HIPAA-aligned workloads.

HIPAA Workloads Air-Gapped Private Networks On-Prem

Cloud Architecture

Design and implementation of cost-optimized cloud infrastructure on AWS, GCP, or Azure — with security controls and operating models suited to genomics workloads.

AWS GCP Azure Kubernetes

Consulting & Strategy

Expert guidance on experimental design, analysis strategy, tool selection, and infrastructure roadmaps. We embed with your team to accelerate discovery.

Strategy Review Training

ML & AI Integration

Applying machine learning and foundation models to biological datasets — from variant effect prediction to drug-target identification and image analysis.

PyTorch ESM AlphaFold LLM
How We Work

Precision-engineered
for your science

01

Discovery & Scoping

Deep-dive into your biological questions, existing data landscape, and infrastructure constraints. We define success criteria together.

02

Architecture & Design

Systems architecture, data flow design, and technology selection — documented, reviewed, and approved before a single line of code is written.

03

Build & Validate

Iterative development with continuous testing against gold-standard datasets. Every pipeline ships with benchmarks and validation reports.

04

Deploy & Operate

Production deployment with monitoring, alerting, and documentation. We provide training and optional managed services to keep everything running.

Sample Pipeline Architecture
FASTQ Ingestion → Quality Control
Adapter Trimming → Read Filtering
Genome Alignment → BAM Processing
Variant Calling → Annotation
Filtering → Clinical Interpretation
Report Generation → Portal Upload
Audit Logging → Compliance Archive
Why CQSB

Built different, on purpose

We are scientists who code, not the other way around.

01

Domain Expertise

Our team holds advanced degrees in molecular biology, genomics, and computational biology. We understand your data because we've generated it ourselves.

02

Security First

From HIPAA-eligible cloud architectures to fully air-gapped on-premise deployments, security is designed in from day one.

03

Reproducibility

Every pipeline is containerized, version-controlled, and tested against reference datasets. Your results are reproducible — always.

04

Scale Agnostic

Whether you're processing 10 samples or 100,000 — our infrastructure auto-scales. Pay for what you use, not what you might need.

05

Transparent Process

Weekly standups, shared repositories, living documentation. You have full visibility into every decision, every line of code, every result.

06

Long-Term Partnership

We don't disappear after delivery. Managed services, training programs, and ongoing consulting ensure your investment compounds over time.

Get Started

Let's build something
that matters

Tell us about your project and we'll set up a technical scoping call within 48 hours.

Email
Based In
Los Angeles · Boston · UAE
Response Time
Within 48 hours
Security & Compliance
We design for regulated and security-sensitive environments, including HIPAA-aligned workflows and private, air-gapped deployments. Mutual NDA available on request.